Liam Ruske presented a poster at the Active and Intelligent Living Matter conference, 26 June – 1 July 2022, Erice, Italy

The beatiful view from the conference centre on Mount Cofano. (Photo by L. Ruske)
Between the 26th of June and the 1st of July 2022 Liam participated in the Active and Intelligent Living Matter conference on Sicily, where he presented a poster summarizing several of his research projects about active continuum theories and their application to biological systems.

Sandrine Heijnen presented a poster at the 5th Meeting of the UCL Cross-Disciplinary Network on Soft Materials, 20th June 2022.

Sandrine Heijnen and her poster. (Photos provided by S. Hejnen)
Sandrine Heijnen attended the 5th Meeting of the UCL Cross-Disciplinary Network on Soft Materials on the 20th of June 2022. She presented a poster titled “Emergent Collective Behaviours for Active Particles in Optical Landscapes” showing the recent development in her project regarding the behaviour of superparamagnetic particles in a light illuminated field. The Meeting presented a lot of interesting ideas by introducing both art and architecture, giving rise to a lot of interesting discussions.

David participated in NanoPlasm 2022, 13-17 June, Cetraro, Italy

David during his elevator pitch talk at NanoPlasm 2022. (Photos provided by D. Bronte Ciriza)
Between the 13th and the 17th of June David participated in NanoPlasm 2022, which took place in Cetraro, Calabria, Italy. The conference was focused on the rapidly growing fields of Plasmonics and Nano-Photonics, which are opening new frontiers in nanoscience and advanced technologies via novel cross-disciplinary research activities. During this conference David presented 2 posters (titles: “Machine learning enhanced calculations of optical forces in the geometrical optics approximation” and “Elongated active particles in speckle fields“) and an elevator pitch talk, introducing his work on machine learning for optical forces calculations and his recent work on elongated active particles in speckle fields.

David participated in the 2022 Young Minds Leadership meeting

David and Fabio with the poster presenting the activities of the Messina chapter. (Photos provided by D. Bronte Ciriza)
Between the 2nd and the 4th of June, David was invited to the YM Leadership meeting in Paris to present the outreach activities carried out by the student chapter in Messina. After three years of virtual engagement the meeting brought together almost 50 YM delegates from 20 different countries as well as many interested students and young researchers from outside of the YM network, making it a great success.

Beyond the programme of the LM the co-location with the EPS Forum, allowed the participants to learn about industrial opportunities and to attend lectures from world-class researchers, including 3 Nobel Laureates. Scientific outreach, cultural exchange, and peaceful international collaboration are more important than ever. Bringing young scientists together and equipping them with tools and skills is a great way of fostering these aspects.

Liam Ruske gives a talk at the CECAM Computational methods and tools for complex suspensions workshop, 23-27 May 2022, Bilbao, Spain

Between the 23rd and the 27th of May 2022 Liam participated in the CECAM workshop on Computational methods and tools for complex suspensions to present some of his work. In his talk titled “Modelling biological matter as active nematic fluids” he highlighted how numerical simulations of active fluids can be used to study the self-organization of three-dimensional tissues in a variety of biological systems, where a continuous influx of energy on a single-cell level drives striking collective behaviour at the tissue scale.

Laura Natali and David Bronte Ciriza presented an effective communication activity in Lisbon

Laura Natali and David Bronte Ciriza during the presentation on the fundamentals of effective communication.(Photo by Alireza Khoshzaban.)
During the ActiveMatter meeting in Lisbon, Laura Natali and David Bronte Ciriza proposed a two hours activity on the fundamentals of effective communication. The activity was structured  in an interactive way, and it began with a open discussion about the importance of communication, especially in science.

Then, the ESRs briefly described their research in a popular science style, so addressed to a broader public. The first hour concluded with a presentation about rules to keep in mind while communicating both in oral and written form.

Afterwards, a few examples among the written texts were selected and discussed with all the participants. The aim was to exchange feedback and suggestions on how to make the communication more effective. The feedback was the inspiration for everyone to review their communication example, and the final versions are being uploaded on the official twitter account @ActiveMatterITN.

David presented an oral contribution at PHOTOPTICS 2022

Snapshot of the motion of an ellipsoid in a double beam optical trap. (Image by D. Bronte Ciriza)
Optical systems are ubiquitous in modern society, with an ever-increasing number of applications covering medical sciences, spatial exploration, information processing and industry, to name but a few examples. In this context, David presented his work on machine learning enhanced optical forces calculations at PHOTOPTICS 2022 between the 10th and the 11th of February. The conference took place online and it was the perfect opportunity to learn from other scientists and discuss the relevance of optics for the study of active matter systems.

Jesús Domínguez presents a poster at NanoBioTech in Montreux, Switzerland, 15-17 November 2021

The ESR Jesus Manuel Antunez Dominguez presenting his poster at the NanoBioTech Conference. Image by J. Domínguez.
Jesús Domínguez attended the NanoBioTech Conference in Montreaux, Switzerland, 15-17th November 2021.
He presented the poster “A microfluidic platform for the study of bacterial biofilms” showing his advances in the development of a droplet-based microfluidic platform for in situ observation of bacterial behavior and biofilms.

The NanoBioTech Conference brings together international researchers in the fields of Micro- and Nanotechnology and its applications in Biology and Medicine.

Apart from the featured talks and presentations on related topics and techniques of interest, Jesus benefited from the direct contact with international researchers, that promoted an exchange of ideas and opens the door for possible future collaborations.

Presentation by D. Bronte Ciriza at the 19th Electromagnetic and Light Scattering Conference

Comparison between the Geometrical Optics (GO) method and the Neural Network (NN) for the optical forces and torques calculation. The NN improvement in speed and accuracy could help to study the motion of active particles in optical landscapes. Image by D. Bronte Ciriza.
Machine learning to enhance the calculation of optical forces in the geometrical optics approximation
David Bronte Ciriza, Alessandro Magazzù, Agnese Callegari, Maria A. Iatì, Giovanni Volpe, Onofrio M. Maragò
Submitted to: ELS-XIX (2021)
Date: 14 July
Time: 12:50 CEST

Short Abstract:
We show how machine learning can improve the speed and accuracy of the optical force calculations in the geometrical optics approximation

Extended Abstract:
Since the pioneering work by Ashkin in the 1970’s, optical forces have played a fundamental role in fields like biology, nanotechnology, or atomic physics. In all these fields, numerical simulations are of great help for validating theories, for the planning of experiments, and in the interpretation of the results. However, the calculation of the forces is computationally expensive and prohibitively slow for numerical simulations when the forces need to be calculated many times in a sequential way.

Recently, machine learning has been demonstrated to be a promising approach to improve the speed of these calculations and therefore, to expand the applicability of numerical simulations for experimental design and analysis. In this work we show that machine learning can be used to improve not only the speed but also the accuracy of the force calculation in the geometrical optics regime, valid when the particles are significantly bigger than the wavelength of the incident light. This is first demonstrated for the case of a spherical particle with 3 degrees of freedom and later expanded to 9 degrees of freedom by including all the relevant parameters involved in the optical forces calculation. Machine learning is proved as a compact, accurate, and fast approach for optical forces calculation and presents a tool that can be used to study systems that, due to computation limitations, were out of the scope of the traditional ray optics approach.

Presentation by D. Bronte Ciriza at OSA-OMA-2021

Optical forces calculated on a sphere with the geometrical optics (left column) and the machine learning (center column) approaches. The difference between both approaches is shown in the column on the right, illustrating the removal of artefacts with the machine learning method.
Machine learning to enhance the calculation of optical forces in the geometrical optics approximation
David Bronte Ciriza, Alessandro Magazzù, Agnese Callegari, Maria A. Iatì, Giovanni Volpe, Onofrio M. Maragò
Submitted to: OSA-OMA-2021, AF2D.2 Contribution
Date: 16 April
Time: 17:00 CEST

Short Abstract:
We show how machine learning can improve the speed and accuracy of the optical force calculations in the geometrical optics approximation

Extended Abstract:
Light can exert forces by exchanging momentum with particles. Since the pioneering work by Ashkin in the 1970’s, optical forces have played a fundamental role in fields like biology, nanotechnology, or atomic physics. Optical tweezers, which are instruments that, by tightly focusing a laser beam, are capable of confining particles in three dimensions, have become a common tool for manipulation of micro- and nano- particles, as well as a force and torque transducer with sensing capabilities at the femtonewton level. Optical tweezers have also been successfully employed to explore novel phenomena, including protein folding and molecular motors, or the optical forces and Brownian motion of 1D and 2D materials.

Numerical simulations play a fundamental role in the planning of experiments and in the interpretation of the results. In some basic cases for optical tweezers, the optical trap can be approximated by a harmonic potential. However, there are many situations where this approximation is insufficient, for example in the case of a particle escaping an optical trap, or for particles that are moving on an optical landscape but are not trapped. In these cases, a more complex treatment of the light-matter interaction is required for a more accurate calculation of the forces. This calculation is computationally expensive and prohibitively slow for numerical simulations when the forces need to be calculated many times in a sequential way. Recently, machine learning has been demonstrated to be a promising approach to improve the speed of these calculations and therefore, to expand the applicability of numerical simulations for experimental design and analysis.

In this work, we explore the geometrical optics regime, valid when the particles are significantly bigger than the wavelength of the incident light. This is typically the case in experiments with micrometer-size particles. The optical field is described by a collection of N light rays and the momentum exchange between the rays and the particle is calculated employing the tools of geometrical optics. The limitation of considering a discrete N number of light rays introduces artifacts in the force calculation. We show that machine learning can be used to improve not only the speed but also the accuracy of the force calculation. This is first demonstrated by training a neural network for the case of a spherical particle with 3 degrees of freedom accounting for the position of the particle. We show how the neural network improves the prediction of the force with respect to the initial training data that has been generated through the geometrical optics approach.

Starting from these results for 3 degrees of freedom, the work has been expanded to 9 degrees of freedom by including all the relevant parameters for the calculation of the optical forces considering also different refractive indexes, shapes, sizes, positions, and orientations of the particle besides different numerical apertures of the objective that focuses the light.

This work proves machine learning as a compact, accurate, and fast approach for optical forces calculation and presents a tool that can be used to study systems that, due to computation limitations, were out of the scope of the traditional ray optics approach.